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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8497-RA through 18771 annotations produced 1 hits



Rhophilin (Rhp):

Annotation Number : CG8497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026374
Gbrowse : chrX:15682925-15687658 (+) // 100.0 //
Probeset : 1634557_at
Accessions : protein= NP_511168; /// NP_996447;, nucleotide= NM_078613; /// NM_206724;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0017049 // GTP-Rho binding // inferred from sequen
FlyMine data for FBgn0026374.
VDRC has 2 RNAi stocks for FBgn0026374 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 34 of 4 3.50Up
Head27 24 of 4 1.20None
Eye30 24 of 4 1.37None
Thoracicoabdominal ganglion61 44 of 4 2.80Up
Salivary gland86 84 of 4 3.90Up
Crop45 24 of 4 2.00Up
Midgut106 34 of 4 4.80Up
Tubule106 174 of 4 4.80Up
Hindgut43 24 of 4 2.00Up
Heart15 04 of 4 0.71None
Fat body12 43 of 4 0.57None
Ovary9 04 of 4 0.40Down
Testis8 14 of 4 0.40Down
Male accessory glands39 24 of 4 1.80Up
Virgin spermatheca22 04 of 4 1.01None
Mated spermatheca25 14 of 4 1.16None
Adult carcass23 43 of 4 1.10None
Larval CNS37 24 of 4 1.68Up
Larval Salivary gland74 44 of 4 3.33Up
Larval midgut104 44 of 4 4.68Up
Larval tubule73 44 of 4 3.30Up
Larval hindgut132 134 of 4 5.95Up
Larval fat body11 20 of 4 0.50Down
Larval trachea94 94 of 4 4.27Up
Larval carcass73 24 of 4 3.31Up
S2 cells (growing)45 54 of 4 2.05Up
Whole fly22 34 of 4

Looking for CG8497-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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