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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8498-RA through 18771 annotations produced 1 hits



(CG8498):

Annotation Number : CG8498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031992
Gbrowse : chr2L:8161920-8162325 (-) // 100.0 //
Probeset : 1636942_at
Accessions : protein= NP_609187;, nucleotide= NM_135343;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // inferr
FlyMine data for FBgn0031992.
VDRC has 2 RNAi stocks for FBgn0031992 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 ± 34 of 4 1.00Up
Head326 ± 154 of 4 1.30Up
Eye251 ± 54 of 4 1.03None
Thoracicoabdominal ganglion205 ± 114 of 4 0.80Down
Salivary gland295 ± 74 of 4 1.21Up
Crop381 ± 134 of 4 1.60Up
Midgut242 ± 114 of 4 1.00None
Tubule220 ± 54 of 4 0.90Down
Hindgut331 ± 64 of 4 1.40Up
Heart451 ± 84 of 4 1.85Up
Fat body427 ± 234 of 4 1.75Up
Ovary352 ± 44 of 4 1.40Up
Testis116 ± 24 of 4 0.50Down
Male accessory glands372 ± 224 of 4 1.50Up
Virgin spermatheca446 ± 64 of 4 1.83Up
Mated spermatheca429 ± 124 of 4 1.76Up
Adult carcass274 ± 204 of 4 1.10None
Larval CNS354 ± 184 of 4 1.45Up
Larval Salivary gland696 ± 234 of 4 2.86Up
Larval midgut362 ± 224 of 4 1.49Up
Larval tubule555 ± 224 of 4 2.30Up
Larval hindgut524 ± 114 of 4 2.15Up
Larval fat body1078 ± 1264 of 4 4.40Up
Larval trachea381 ± 754 of 4 1.56Up
Larval carcass428 ± 164 of 4 1.76Up
S2 cells (growing)264 ± 104 of 4 1.08None
Whole fly244 ± 24 of 4

Looking for CG8498-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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