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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8508-RA through 18771 annotations produced 1 hits



(CG8508):

Annotation Number : CG8508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038123
Gbrowse : chr3R:9011244-9012232 (-) // 100.0 //
Probeset : 1637728_at
Accessions : protein= NP_650261;, nucleotide= NM_142004;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038123.
BDGP gene expression has embryonic in situ data for CG8508: 4 pix of staining in 1 body parts.
BioGrid reports that CG8508 interacts with CG9239 .
VDRC has 3 RNAi stocks for FBgn0038123 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 0.00Down
Head8 ± 22 of 4 0.10Down
Eye4 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.10Down
Salivary gland12 ± 30 of 4 0.10Down
Crop6 ± 12 of 4 0.10Down
Midgut13 ± 00 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut7 ± 20 of 4 0.10Down
Heart5 ± 02 of 4 0.04Down
Fat body8 ± 30 of 4 0.07Down
Ovary4 ± 00 of 4 0.00Down
Testis1125 ± 334 of 4 9.40Up
Male accessory glands11 ± 41 of 4 0.10Down
Virgin spermatheca8 ± 22 of 4 0.07Down
Mated spermatheca8 ± 11 of 4 0.07Down
Adult carcass15 ± 11 of 4 0.10Down
Larval CNS5 ± 10 of 4 0.05Down
Larval Salivary gland8 ± 30 of 4 0.07Down
Larval midgut14 ± 20 of 4 0.12Down
Larval tubule10 ± 11 of 4 0.10Down
Larval hindgut6 ± 10 of 4 0.05Down
Larval fat body115 ± 594 of 4 1.00None
Larval trachea9 ± 71 of 4 0.08Down
Larval carcass11 ± 13 of 4 0.10Down
S2 cells (growing)9 ± 12 of 4 0.08Down
Whole fly120 ± 64 of 4

Looking for CG8508-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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