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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8532-RB through 18771 annotations produced 1 hits

Enhancer of faf bE25 (lqf):

Annotation Number : CG8532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028582
Gbrowse : chr3L:7521903-7531379 (+) // 100.0 //
Probeset : 1640515_s_at
Accessions : protein= NP_001097529; /// NP_523962; /// NP_729266; /// NP_729267; /// NP_729268; /// NP_996013;, nucleotide= NM_001104059; /// NM_079238; /// NM_168219; /// NM_168220; /// NM_168221; /// NM_206291;
FlyMine data for FBgn0028582.
BDGP gene expression has embryonic in situ data for lqf: 4 pix of staining in 1 body parts.
BioGrid reports that CG8532 interacts with CG9012 CG4097 CG18102 CG1945 CG1945 CG1945 CG1945 CG7425 CG4260 .
TRiP has 2 RNAi stocks for FBgn0028582 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028582 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain316 74 of 4 1.60Up
Head491 394 of 4 2.40Up
Eye1468 324 of 4 7.21Up
Thoracicoabdominal ganglion291 114 of 4 1.40Up
Salivary gland410 264 of 4 2.01Up
Crop427 164 of 4 2.10Up
Midgut413 84 of 4 2.00Up
Tubule975 684 of 4 4.80Up
Hindgut420 214 of 4 2.10Up
Heart429 274 of 4 2.11Up
Fat body324 444 of 4 1.60Up
Ovary135 54 of 4 0.70Down
Testis47 34 of 4 0.20Down
Male accessory glands323 84 of 4 1.60Up
Virgin spermatheca384 64 of 4 1.89Up
Mated spermatheca353 44 of 4 1.73Up
Adult carcass234 44 of 4 1.20None
Larval CNS320 444 of 4 1.58Up
Larval Salivary gland646 554 of 4 3.18Up
Larval midgut955 1184 of 4 4.70Up
Larval tubule3021 674 of 414.80Up
Larval hindgut1069 914 of 4 5.25Up
Larval fat body291 404 of 4 1.40None
Larval trachea616 664 of 4 3.03Up
Larval carcass638 1084 of 4 3.14Up
S2 cells (growing)296 44 of 4 1.46Up
Whole fly203 164 of 4

Looking for CG8532-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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