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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8539-RA through 18771 annotations produced 1 hits



/// (CG8539 /// DsimCG8539):

Annotation Number : CG8539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035791
Gbrowse : chr3L:7490368-7491771 (-) // 100.0 //
Probeset : 1628226_at
Accessions : protein= NP_648130;, nucleotide= NM_139873;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0035791.
BioGrid reports that CG8539 interacts with CG9177 CG9745 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 03 of 4 0.20Down
Head153 154 of 4 4.20Up
Eye72 224 of 4 2.01None
Thoracicoabdominal ganglion6 11 of 4 0.20Down
Salivary gland16 10 of 4 0.44Down
Crop40 54 of 4 1.10None
Midgut95 44 of 4 2.60Up
Tubule163 334 of 4 4.50Up
Hindgut61 64 of 4 1.70Up
Heart218 204 of 4 6.00Up
Fat body893 1794 of 424.58Up
Ovary9 04 of 4 0.20Down
Testis3 01 of 4 0.10Down
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca1072 384 of 429.49Up
Mated spermatheca635 364 of 417.48Up
Adult carcass232 284 of 4 6.40Up
Larval CNS2 00 of 4 0.07Down
Larval Salivary gland5 00 of 4 0.15Down
Larval midgut19 22 of 4 0.53Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut55 114 of 4 1.53None
Larval fat body7 10 of 4 0.20Down
Larval trachea8 14 of 4 0.22Down
Larval carcass14 42 of 4 0.40Down
S2 cells (growing)4 00 of 4 0.11Down
Whole fly36 44 of 4

Looking for CG8539-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime