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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8540-RA through 18771 annotations produced 1 hits



Cyp316a1 (Cyp316a1):

Annotation Number : CG8540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035790
Gbrowse : chr3L:7484963-7486584 (+) // 100.0 //
Probeset : 1634540_at
Accessions : protein= NP_648129;, nucleotide= NM_139872;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0035790.
Homophila reports that CG8540 is a close match (7e-12) to human gene CYP5;GHOSAL;TBXAS1 (NP_112246), a gene associated with Ghosal syndrome, 231095 (3);Thromboxane synthase deficiency (2).
VDRC has 2 RNAi stocks for FBgn0035790 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.30None
Head2 11 of 4 1.30None
Eye1 11 of 4 0.99None
Thoracicoabdominal ganglion3 00 of 4 1.90None
Salivary gland10 20 of 4 5.68None
Crop6 12 of 4 3.60Up
Midgut4 11 of 4 2.50None
Tubule6 11 of 4 3.30Up
Hindgut3 00 of 4 2.00None
Heart3 10 of 4 2.11None
Fat body4 21 of 4 2.53None
Ovary1 00 of 4 0.60None
Testis7 14 of 4 4.10Up
Male accessory glands5 10 of 4 2.80None
Virgin spermatheca2 00 of 4 1.51None
Mated spermatheca2 00 of 4 1.47None
Adult carcass7 21 of 4 4.00None
Larval CNS2 02 of 4 1.43None
Larval Salivary gland3 00 of 4 1.70None
Larval midgut8 32 of 4 4.38None
Larval tubule4 00 of 4 2.30Up
Larval hindgut3 11 of 4 2.11None
Larval fat body6 20 of 4 3.60None
Larval trachea0 00 of 4 0.32None
Larval carcass2 10 of 4 1.45None
S2 cells (growing)3 00 of 4 1.64None
Whole fly1 00 of 4

Looking for CG8540-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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