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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8544-RB through 18771 annotations produced 1 hits



scalloped (sd):

Annotation Number : CG8544
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003345
Gbrowse : chrX:15706360-15719530 (+) // 100.0 //
Probeset : 1625515_a_at
Accessions : protein= NP_001096989; /// NP_001096990; /// NP_001096991; /// NP_001096992; /// NP_001162761; /// NP_001162762; /// NP_511169; /// NP_727900; /// NP_996450;, nucleotide= NM_001103519; /// NM_001103520; /// NM_001103521; /// NM_001103522; /// NM_001169290; /// NM_001169291; /// NM_078614; /// NM_167465; /// NM_206727;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0003345.
BDGP gene expression has embryonic in situ data for sd: 12 pix of staining in 10 body parts.
Homophila reports that CG8544 is a close match (5e-125) to human gene TEAD1;TCF13;REF1 (NP_068780), a gene associated with Sveinsson choreoretinal atrophy, 108985 (3).
BioGrid reports that CG8544 interacts with CG32120 CG32120 CG3978 CG11387 CG8573 CG3830 CG3830 CG3830 CG3830 CG3830 CG3830 CG4889 .
TRiP has 2 RNAi stocks for FBgn0003345 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain302 94 of 4 3.10Up
Head132 134 of 4 1.40None
Eye312 114 of 4 3.24Up
Thoracicoabdominal ganglion305 284 of 4 3.20Up
Salivary gland317 164 of 4 3.28Up
Crop304 94 of 4 3.10Up
Midgut133 74 of 4 1.40Up
Tubule227 184 of 4 2.40Up
Hindgut176 44 of 4 1.80Up
Heart188 64 of 4 1.95Up
Fat body68 173 of 4 0.71None
Ovary90 54 of 4 0.90None
Testis82 74 of 4 0.90None
Male accessory glands364 94 of 4 3.80Up
Virgin spermatheca117 104 of 4 1.21None
Mated spermatheca156 174 of 4 1.62Up
Adult carcass167 74 of 4 1.70Up
Larval CNS460 494 of 4 4.76Up
Larval Salivary gland210 94 of 4 2.17Up
Larval midgut150 64 of 4 1.56Up
Larval tubule134 44 of 4 1.40Up
Larval hindgut213 94 of 4 2.21Up
Larval fat body46 31 of 4 0.50Down
Larval trachea558 254 of 4 5.78Up
Larval carcass248 134 of 4 2.57Up
S2 cells (growing)627 234 of 4 6.49Up
Whole fly96 74 of 4

Looking for CG8544-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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