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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8549-RA through 18771 annotations produced 1 hits


Annotation Number : CG8549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035714
Gbrowse : chr3L:6746012-6747137 (+) // 100.0 //
Probeset : 1626412_at
Accessions : protein= NP_648057;, nucleotide= NM_139800;
FlyMine data for FBgn0035714.
Homophila reports that CG8549 is a close match (2e-62) to human gene SBDS;SDS (NP_057122), a gene associated with Shwachman-Bodian-Diamond syndrome, 260400 (3).
VDRC has 2 RNAi stocks for FBgn0035714 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 14 of 4 0.30Down
Head103 14 of 4 0.60Down
Eye95 44 of 4 0.57Down
Thoracicoabdominal ganglion46 54 of 4 0.30Down
Salivary gland42 74 of 4 0.26Down
Crop105 44 of 4 0.60Down
Midgut153 14 of 4 0.90Down
Tubule154 84 of 4 0.90None
Hindgut106 24 of 4 0.60Down
Heart209 64 of 4 1.27Up
Fat body162 164 of 4 0.98None
Ovary216 44 of 4 1.30Up
Testis393 54 of 4 2.40Up
Male accessory glands126 114 of 4 0.80Down
Virgin spermatheca188 134 of 4 1.14None
Mated spermatheca152 74 of 4 0.92None
Adult carcass138 64 of 4 0.80Down
Larval CNS113 34 of 4 0.68Down
Larval Salivary gland83 14 of 4 0.50Down
Larval midgut67 64 of 4 0.40Down
Larval tubule181 24 of 4 1.10Up
Larval hindgut88 64 of 4 0.54Down
Larval fat body159 224 of 4 1.00None
Larval trachea224 144 of 4 1.35Up
Larval carcass83 04 of 4 0.50Down
S2 cells (growing)158 14 of 4 0.96None
Whole fly165 34 of 4

Looking for CG8549-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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