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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8552-RA through 18771 annotations produced 1 hits



Sec23-interacting protein /// (CG8552 /// DsimCG8552):

Annotation Number : CG8552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031990
Gbrowse : chr2L:8134246-8159575 (-) // 100.0 //
Probeset : 1624826_at
Accessions : protein= NP_609185;, nucleotide= NM_135341;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008970 // phospholipase A1 activity // inferred fr
FlyMine data for FBgn0031990.
BDGP gene expression has embryonic in situ data for CG8552: 8 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0031990 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain391 64 of 4 1.90Up
Head326 154 of 4 1.60Up
Eye192 144 of 4 0.93None
Thoracicoabdominal ganglion321 84 of 4 1.60Up
Salivary gland731 244 of 4 3.55Up
Crop268 84 of 4 1.30Up
Midgut317 24 of 4 1.50Up
Tubule205 64 of 4 1.00None
Hindgut288 94 of 4 1.40Up
Heart240 124 of 4 1.17None
Fat body378 54 of 4 1.84Up
Ovary251 54 of 4 1.20Up
Testis315 134 of 4 1.50Up
Male accessory glands429 254 of 4 2.10Up
Virgin spermatheca502 264 of 4 2.44Up
Mated spermatheca414 134 of 4 2.01Up
Adult carcass316 144 of 4 1.50Up
Larval CNS183 74 of 4 0.89Down
Larval Salivary gland961 774 of 4 4.67Up
Larval midgut335 164 of 4 1.63Up
Larval tubule249 44 of 4 1.20Up
Larval hindgut199 74 of 4 0.97None
Larval fat body278 174 of 4 1.40Up
Larval trachea153 194 of 4 0.74Down
Larval carcass166 44 of 4 0.81Down
S2 cells (growing)384 74 of 4 1.87Up
Whole fly206 64 of 4

Looking for CG8552-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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