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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8560-RA through 18771 annotations produced 1 hits


/// (CG8560 /// DsecCG8560):

Annotation Number : CG8560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035781
Gbrowse : chr3L:7395429-7397281 (-) // 100.0 //
Probeset : 1639641_at
Accessions : protein= NP_648120;, nucleotide= NM_139863;
Interpro : 0004180 // carboxypeptidase activity // non-traceable author statement /// 0004180 // carboxypeptidase activity // infer
FlyMine data for FBgn0035781.
BDGP gene expression has embryonic in situ data for CG8560: 12 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0035781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye5 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 20 of 4 0.02Down
Crop3 ± 20 of 4 0.00Down
Midgut1719 ± 3234 of 4 7.20Up
Tubule4 ± 00 of 4 0.00Down
Hindgut19 ± 44 of 4 0.10Down
Heart2 ± 01 of 4 0.01Down
Fat body1 ± 00 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis565 ± 364 of 4 2.40Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS8 ± 131 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut3854 ± 944 of 416.17Up
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut76 ± 84 of 4 0.32Down
Larval fat body69 ± 402 of 4 0.30Down
Larval trachea162 ± 364 of 4 0.68None
Larval carcass20 ± 92 of 4 0.08Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly238 ± 334 of 4

Looking for CG8560-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime