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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8567-RA through 18771 annotations produced 1 hits



deaf-1 (Deaf1):

Annotation Number : CG8567
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013799
Gbrowse : chr3L:19811285-19822623 (+) // 100.0 //
Probeset : 1635240_at
Accessions : protein= NP_001034033; /// NP_524169;, nucleotide= NM_001038944; /// NM_079445;
Pathway : DNA-dependent // inferred from direct assay /// 0050776 // regulation of immune response // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0013799.
BDGP gene expression has embryonic in situ data for Deaf1: 14 pix of staining in 11 body parts.
TRiP has 1 RNAi stocks for FBgn0013799 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013799 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 94 of 4 3.80Up
Head56 34 of 4 1.00None
Eye34 24 of 4 0.60Down
Thoracicoabdominal ganglion167 74 of 4 2.90Up
Salivary gland62 64 of 4 1.06None
Crop55 34 of 4 1.00None
Midgut35 24 of 4 0.60Down
Tubule29 24 of 4 0.50Down
Hindgut42 24 of 4 0.70Down
Heart16 24 of 4 0.28Down
Fat body43 34 of 4 0.74Down
Ovary111 54 of 4 1.90Up
Testis49 54 of 4 0.80None
Male accessory glands80 34 of 4 1.40Up
Virgin spermatheca23 14 of 4 0.41Down
Mated spermatheca25 34 of 4 0.43Down
Adult carcass57 74 of 4 1.00None
Larval CNS117 34 of 4 2.01Up
Larval Salivary gland73 24 of 4 1.25Up
Larval midgut52 44 of 4 0.90None
Larval tubule48 34 of 4 0.80None
Larval hindgut56 24 of 4 0.96None
Larval fat body36 24 of 4 0.60Down
Larval trachea17 14 of 4 0.29Down
Larval carcass40 34 of 4 0.69Down
S2 cells (growing)113 14 of 4 1.94Up
Whole fly58 34 of 4

Looking for CG8567-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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