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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8579-RA through 18771 annotations produced 1 hits



Jonah 43E (Jon44E):

Annotation Number : CG8579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001285
Gbrowse : chr2R:4578954-4579856 (+) // 100.0 //
Probeset : 1639364_at
Accessions : protein= NP_724699;, nucleotide= NM_165618;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0001285.
Homophila reports that CG8579 is a close match (3e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
TRiP has 1 RNAi stocks for FBgn0001285 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00None
Head2 ± 00 of 4 0.00None
Eye3 ± 00 of 4 0.01None
Thoracicoabdominal ganglion2 ± 10 of 4 0.00None
Salivary gland2 ± 00 of 4 0.01None
Crop3 ± 10 of 4 0.00None
Midgut2338 ± 3114 of 4 9.10Up
Tubule5 ± 00 of 4 0.00Down
Hindgut6 ± 10 of 4 0.00None
Heart2 ± 10 of 4 0.01None
Fat body1 ± 00 of 4 0.01None
Ovary2 ± 00 of 4 0.00None
Testis2 ± 00 of 4 0.00None
Male accessory glands2 ± 00 of 4 0.00None
Virgin spermatheca2 ± 00 of 4 0.01None
Mated spermatheca3 ± 20 of 4 0.01None
Adult carcass4 ± 20 of 4 0.00None
Larval CNS2 ± 20 of 4 0.01None
Larval Salivary gland4 ± 10 of 4 0.02None
Larval midgut4481 ± 1034 of 417.35Up
Larval tubule1 ± 00 of 4 0.00None
Larval hindgut3 ± 00 of 4 0.01None
Larval fat body1 ± 00 of 4 0.00None
Larval trachea3 ± 30 of 4 0.01None
Larval carcass1 ± 00 of 4 0.01None
S2 cells (growing)0 ± 00 of 4 0.00None
Whole fly258 ± 954 of 4

Looking for CG8579-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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