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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8580-RA through 18771 annotations produced 1 hits



bhringi (akirin):

Annotation Number : CG8580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0082598
Gbrowse : chr3L:7362898-7366118 (+) // 100.0 //
Probeset : 1624418_s_at
Accessions : protein= NP_648113; /// NP_729249;, nucleotide= NM_139856; /// NM_168211;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0082598.
BioGrid reports that CG8580 interacts with CG9027 CG9654 CG3978 .
TRiP has 1 RNAi stocks for FBgn0082598 available for purchase.
VDRC has 1 RNAi stocks for FBgn0082598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain423 124 of 4 0.50Down
Head385 144 of 4 0.50Down
Eye874 84 of 4 1.10Up
Thoracicoabdominal ganglion497 214 of 4 0.60Down
Salivary gland444 474 of 4 0.56Down
Crop632 154 of 4 0.80Down
Midgut506 64 of 4 0.60Down
Tubule287 124 of 4 0.40Down
Hindgut436 64 of 4 0.50Down
Heart971 84 of 4 1.22Up
Fat body768 634 of 4 0.97None
Ovary1441 334 of 4 1.80Up
Testis872 354 of 4 1.10None
Male accessory glands454 174 of 4 0.60Down
Virgin spermatheca573 214 of 4 0.72Down
Mated spermatheca607 294 of 4 0.76Down
Adult carcass393 344 of 4 0.50Down
Larval CNS1034 824 of 4 1.30Up
Larval Salivary gland1333 364 of 4 1.68Up
Larval midgut726 354 of 4 0.91None
Larval tubule898 284 of 4 1.10Up
Larval hindgut791 104 of 4 1.00None
Larval fat body1141 214 of 4 1.40Up
Larval trachea1148 764 of 4 1.45Up
Larval carcass830 484 of 4 1.05None
S2 cells (growing)1057 144 of 4 1.33Up
Whole fly793 184 of 4

Looking for CG8580-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime