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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8583-RA through 18771 annotations produced 1 hits



sec63 (sec63):

Annotation Number : CG8583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035771
Gbrowse : chr3L:7353662-7357466 (+) // 100.0 //
Probeset : 1626607_at
Accessions : protein= NP_648111;, nucleotide= NM_139854;
Pathway : 0005785 // signal recognition particle receptor complex // inferred from sequence or structural similarity /// 0045169 /
Interpro : 0005047 // signal recognition particle binding // inferred from sequence or structural similarity /// 0031072 // heat sh
FlyMine data for FBgn0035771.
BDGP gene expression has embryonic in situ data for CG8583: 18 pix of staining in 11 body parts.
Homophila reports that CG8583 is a close match (2e-159) to human gene SEC63 (NP_009145), a gene associated with Polycystic liver disease, 174050 (3).
VDRC has 3 RNAi stocks for FBgn0035771 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 84 of 4 0.60Down
Head303 64 of 4 0.90None
Eye285 34 of 4 0.89Down
Thoracicoabdominal ganglion193 104 of 4 0.60Down
Salivary gland2216 924 of 4 6.89Up
Crop342 84 of 4 1.10None
Midgut374 84 of 4 1.20Up
Tubule275 214 of 4 0.90Down
Hindgut341 24 of 4 1.10None
Heart455 64 of 4 1.41Up
Fat body664 344 of 4 2.07Up
Ovary392 154 of 4 1.20Up
Testis203 134 of 4 0.60Down
Male accessory glands2470 534 of 4 7.70Up
Virgin spermatheca600 84 of 4 1.87Up
Mated spermatheca710 634 of 4 2.21Up
Adult carcass519 134 of 4 1.60Up
Larval CNS310 24 of 4 0.97None
Larval Salivary gland1455 864 of 4 4.52Up
Larval midgut305 134 of 4 0.95None
Larval tubule243 34 of 4 0.80Down
Larval hindgut349 124 of 4 1.09None
Larval fat body381 194 of 4 1.20Up
Larval trachea378 634 of 4 1.18None
Larval carcass421 184 of 4 1.31Up
S2 cells (growing)526 114 of 4 1.64Up
Whole fly321 64 of 4

Looking for CG8583-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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