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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8584-RA through 18771 annotations produced 1 hits


(CG8584):

Annotation Number : CG8584
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033322
Gbrowse : chr2R:4588196-4589299 (-) // 100.0 //
Probeset : 1633421_at
Accessions : protein= NP_610404;, nucleotide= NM_136560;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred fro
FlyMine data for FBgn0033322.
BDGP gene expression has embryonic in situ data for CG8584: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033322 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland15 ± 60 of 4 0.35Down
Crop5 ± 20 of 4 0.10Down
Midgut7 ± 20 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.05Down
Fat body8 ± 52 of 4 0.18Down
Ovary0 ± 00 of 4 0.00Down
Testis619 ± 184 of 414.30Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.07Down
Mated spermatheca4 ± 10 of 4 0.11Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.08Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut3 ± 10 of 4 0.07Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut4 ± 00 of 4 0.09Down
Larval fat body61 ± 333 of 4 1.40None
Larval trachea4 ± 31 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly43 ± 44 of 4

Looking for CG8584-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime