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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8590-RA through 18771 annotations produced 1 hits



Kinesin-Like-Protein-at-3A (Klp3A):

Annotation Number : CG8590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011606
Gbrowse : chrX:2493189-2498085 (-) // 100.0 //
Probeset : 1624632_at
Accessions : protein= NP_525053;, nucleotide= NM_080314;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005818 // a
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from elec
FlyMine data for FBgn0011606.
Homophila reports that CG8590 is a close match (8e-54) to human gene CMT2A;CMT2A1;KIF1B (NP_904325), a gene associated with Charcot-Marie-Tooth disease, type 2A1, 118210 (3);Neuroblastoma, 256700 (3);Pheochromocytoma, 171300 (3).
BioGrid reports that CG8590 interacts with CG8907 .
TRiP has 1 RNAi stocks for FBgn0011606 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 04 of 4 0.00Down
Head12 ± 04 of 4 0.10Down
Eye13 ± 14 of 4 0.07Down
Thoracicoabdominal ganglion9 ± 13 of 4 0.00Down
Salivary gland21 ± 43 of 4 0.10Down
Crop19 ± 14 of 4 0.10Down
Midgut23 ± 24 of 4 0.10Down
Tubule15 ± 13 of 4 0.10Down
Hindgut20 ± 14 of 4 0.10Down
Heart9 ± 03 of 4 0.05Down
Fat body17 ± 24 of 4 0.08Down
Ovary518 ± 114 of 4 2.40Up
Testis577 ± 364 of 4 2.70Up
Male accessory glands34 ± 34 of 4 0.20Down
Virgin spermatheca14 ± 14 of 4 0.07Down
Mated spermatheca14 ± 14 of 4 0.07Down
Adult carcass22 ± 53 of 4 0.10Down
Larval CNS380 ± 264 of 4 1.80Up
Larval Salivary gland38 ± 14 of 4 0.18Down
Larval midgut20 ± 14 of 4 0.10Down
Larval tubule25 ± 24 of 4 0.10Down
Larval hindgut37 ± 14 of 4 0.18Down
Larval fat body70 ± 204 of 4 0.30Down
Larval trachea95 ± 184 of 4 0.45Down
Larval carcass59 ± 44 of 4 0.28Down
S2 cells (growing)357 ± 224 of 4 1.69Up
Whole fly212 ± 54 of 4

Looking for CG8590-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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