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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8593-RA through 18771 annotations produced 1 hits



geranylgeranyl pyrophosphate synthase (qm):

Annotation Number : CG8593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019662
Gbrowse : chr3L:7341414-7346731 (+) // 100.0 //
Probeset : 1635967_at
Accessions : protein= NP_001163370; /// NP_523958;, nucleotide= NM_001169899; /// NM_079234;
Interpro : 0004161 // dimethylallyltranstransferase activity // inferred from sequence or structural similarity /// 0004161 // dime
FlyMine data for FBgn0019662.
BDGP gene expression has embryonic in situ data for qm: 16 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0019662 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain280 64 of 4 4.10Up
Head141 104 of 4 2.10Up
Eye224 144 of 4 3.29Up
Thoracicoabdominal ganglion157 34 of 4 2.30Up
Salivary gland52 44 of 4 0.77None
Crop179 74 of 4 2.60Up
Midgut115 94 of 4 1.70Up
Tubule30 14 of 4 0.40Down
Hindgut66 14 of 4 1.00None
Heart58 54 of 4 0.85None
Fat body36 34 of 4 0.54Down
Ovary70 14 of 4 1.00None
Testis47 14 of 4 0.70Down
Male accessory glands44 94 of 4 0.70None
Virgin spermatheca36 14 of 4 0.53Down
Mated spermatheca35 14 of 4 0.51Down
Adult carcass41 24 of 4 0.60Down
Larval CNS114 164 of 4 1.67Up
Larval Salivary gland43 24 of 4 0.64Down
Larval midgut156 134 of 4 2.29Up
Larval tubule87 24 of 4 1.30Up
Larval hindgut84 34 of 4 1.24Up
Larval fat body43 34 of 4 0.60Down
Larval trachea48 64 of 4 0.71Down
Larval carcass47 34 of 4 0.69Down
S2 cells (growing)127 54 of 4 1.87Up
Whole fly68 54 of 4

Looking for CG8593-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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