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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8609-RA through 18771 annotations produced 1 hits



Mediator complex subunit 4 (MED4):

Annotation Number : CG8609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035754
Gbrowse : chr3L:7242628-7243623 (-) // 100.0 //
Probeset : 1641251_at
Accessions : protein= NP_648094;, nucleotide= NM_139837;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from direct assay
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0035754.
BioGrid reports that CG8609 interacts with CG9205 .
TRiP has 1 RNAi stocks for FBgn0035754 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 14 of 4 1.00None
Head22 34 of 4 0.60None
Eye26 24 of 4 0.66None
Thoracicoabdominal ganglion27 14 of 4 0.70None
Salivary gland41 72 of 4 1.06None
Crop36 44 of 4 0.90None
Midgut21 10 of 4 0.50Down
Tubule30 24 of 4 0.80Down
Hindgut36 24 of 4 0.90None
Heart20 14 of 4 0.51Down
Fat body20 11 of 4 0.52Down
Ovary81 34 of 4 2.10Up
Testis31 14 of 4 0.80None
Male accessory glands30 03 of 4 0.80None
Virgin spermatheca19 03 of 4 0.48Down
Mated spermatheca19 14 of 4 0.50Down
Adult carcass20 53 of 4 0.50Down
Larval CNS69 24 of 4 1.77Up
Larval Salivary gland53 23 of 4 1.36None
Larval midgut8 10 of 4 0.20Down
Larval tubule34 44 of 4 0.90None
Larval hindgut25 04 of 4 0.63None
Larval fat body31 31 of 4 0.80None
Larval trachea30 74 of 4 0.78None
Larval carcass23 03 of 4 0.59None
S2 cells (growing)39 14 of 4 0.99None
Whole fly39 54 of 4

Looking for CG8609-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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