Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8611-RA through 18771 annotations produced 1 hits



(CG8611):

Annotation Number : CG8611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027602
Gbrowse : chrX:17307829-17316188 (-) // 100.0 //
Probeset : 1627032_a_at
Accessions : protein= NP_573214; /// NP_788922;, nucleotide= NM_132986; /// NM_176749;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0027602.
VDRC has 2 RNAi stocks for FBgn0027602 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 0.40Down
Head21 ± 24 of 4 0.30Down
Eye14 ± 04 of 4 0.22Down
Thoracicoabdominal ganglion38 ± 44 of 4 0.60Down
Salivary gland39 ± 13 of 4 0.59Down
Crop23 ± 34 of 4 0.40Down
Midgut28 ± 54 of 4 0.40Down
Tubule21 ± 63 of 4 0.30Down
Hindgut21 ± 34 of 4 0.30Down
Heart19 ± 14 of 4 0.29Down
Fat body39 ± 74 of 4 0.58Down
Ovary126 ± 44 of 4 1.90Up
Testis5 ± 13 of 4 0.10Down
Male accessory glands63 ± 74 of 4 0.90None
Virgin spermatheca35 ± 14 of 4 0.52Down
Mated spermatheca56 ± 14 of 4 0.85None
Adult carcass25 ± 24 of 4 0.40Down
Larval CNS82 ± 64 of 4 1.23None
Larval Salivary gland58 ± 34 of 4 0.88None
Larval midgut25 ± 24 of 4 0.39Down
Larval tubule12 ± 14 of 4 0.20Down
Larval hindgut32 ± 24 of 4 0.49Down
Larval fat body15 ± 42 of 4 0.20Down
Larval trachea43 ± 34 of 4 0.66Down
Larval carcass64 ± 104 of 4 0.96None
S2 cells (growing)71 ± 34 of 4 1.07None
Whole fly67 ± 54 of 4

Looking for CG8611-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime