FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8612-RA through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L50 (mRpL50):

Annotation Number : CG8612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028648
Gbrowse : chr3L:7236173-7237032 (-) // 100.0 //
Probeset : 1640761_at
Accessions : protein= NP_648092;, nucleotide= NM_139835;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028648.
BDGP gene expression has embryonic in situ data for mRpL50: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0028648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	151 ± 3	4 of 4	1.10	None
Head	95 ± 4	4 of 4	0.70	Down
Eye	77 ± 3	4 of 4	0.58	Down
Thoracicoabdominal ganglion	140 ± 4	4 of 4	1.10	None
Salivary gland	91 ± 5	3 of 4	0.69	Down
Crop	89 ± 5	4 of 4	0.70	Down
Midgut	98 ± 2	4 of 4	0.70	Down
Tubule	46 ± 3	4 of 4	0.30	Down
Hindgut	100 ± 1	4 of 4	0.80	Down
Heart	71 ± 1	4 of 4	0.54	Down
Fat body	102 ± 9	4 of 4	0.77	Down
Ovary	235 ± 3	4 of 4	1.80	Up
Testis	102 ± 2	4 of 4	0.80	Down
Male accessory glands	88 ± 6	4 of 4	0.70	Down
Virgin spermatheca	74 ± 3	4 of 4	0.56	Down
Mated spermatheca	75 ± 5	4 of 4	0.57	Down
Adult carcass	83 ± 2	4 of 4	0.60	Down
Larval CNS	217 ± 6	4 of 4	1.64	Up
Larval Salivary gland	114 ± 10	4 of 4	0.86	None
Larval midgut	71 ± 7	4 of 4	0.54	Down
Larval tubule	60 ± 1	4 of 4	0.50	Down
Larval hindgut	155 ± 10	4 of 4	1.17	None
Larval fat body	75 ± 3	4 of 4	0.60	Down
Larval trachea	97 ± 12	4 of 4	0.74	Down
Larval carcass	115 ± 16	4 of 4	0.87	None
S2 cells (growing)	129 ± 4	4 of 4	0.98	None
Whole fly	132 ± 2	4 of 4

Looking for CG8612-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720