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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8622-RA through 18771 annotations produced 1 hits


Accessory gland protein 53Ea (Acp53Ea):

Annotation Number : CG8622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015584
Gbrowse : chr2R:12637306-12637827 (-) // 100.0 //
Probeset : 1627990_at
Accessions : protein= NP_477151;, nucleotide= NM_057803;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005179 // hormone activity // non-traceable author statement
FlyMine data for FBgn0015584.
BDGP gene expression has embryonic in situ data for Acp53Ea: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0015584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland7 ± 00 of 4 0.00Down
Crop2 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 11 of 4 0.00Down
Fat body3 ± 31 of 4 0.00Down
Ovary12 ± 101 of 4 0.00Down
Testis146 ± 704 of 4 0.10Down
Male accessory glands11724 ± 3774 of 4 6.70Up
Virgin spermatheca2 ± 00 of 4 0.00Down
Mated spermatheca3 ± 10 of 4 0.00Down
Adult carcass161 ± 513 of 4 0.10Down
Larval CNS1 ± 01 of 4 0.00Down
Larval Salivary gland4 ± 11 of 4 0.00Down
Larval midgut7 ± 12 of 4 0.00Down
Larval tubule3 ± 11 of 4 0.00Down
Larval hindgut3 ± 01 of 4 0.00Down
Larval fat body5 ± 00 of 4 0.00Down
Larval trachea4 ± 41 of 4 0.00Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly1742 ± 2764 of 4

Looking for CG8622-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime