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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8625-RA through 18771 annotations produced 1 hits



ISWI ATPase (Iswi):

Annotation Number : CG8625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011604
Gbrowse : chr2R:8524122-8528133 (+) // 100.0 //
Probeset : 1641309_s_at
Accessions : protein= NP_523719; /// NP_725203; /// NP_725204;, nucleotide= NM_078995; /// NM_165930; /// NM_165931;
Pathway : DNA-dependent // inferred from direct assay /// 0007517 // muscle organ development // inferred from mutant phenotype /
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from p
FlyMine data for FBgn0011604.
BDGP gene expression has embryonic in situ data for Iswi: 19 pix of staining in 14 body parts.
Homophila reports that CG8625 is a close match (3e-24) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
BioGrid reports that CG8625 interacts with CG4236 CG1966 Dmel CG13399 CG15736 Dmel CG13399 CG1966 Dmel CG13399 CG15736 CG1966 CG1966 CG32346 .
TRiP has 2 RNAi stocks for FBgn0011604 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011604 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain272 24 of 4 1.40Up
Head88 74 of 4 0.50Down
Eye120 104 of 4 0.64Down
Thoracicoabdominal ganglion234 84 of 4 1.20Up
Salivary gland122 94 of 4 0.65Down
Crop90 64 of 4 0.50Down
Midgut86 44 of 4 0.50Down
Tubule98 44 of 4 0.50Down
Hindgut95 44 of 4 0.50Down
Heart58 44 of 4 0.31Down
Fat body51 64 of 4 0.27Down
Ovary427 164 of 4 2.30Up
Testis340 74 of 4 1.80Up
Male accessory glands63 44 of 4 0.30Down
Virgin spermatheca37 24 of 4 0.20Down
Mated spermatheca36 04 of 4 0.19Down
Adult carcass43 54 of 4 0.20Down
Larval CNS787 604 of 4 4.17Up
Larval Salivary gland178 154 of 4 0.94None
Larval midgut80 64 of 4 0.42Down
Larval tubule147 54 of 4 0.80Down
Larval hindgut116 54 of 4 0.61Down
Larval fat body110 244 of 4 0.60Down
Larval trachea208 174 of 4 1.10None
Larval carcass129 44 of 4 0.69Down
S2 cells (growing)587 354 of 4 3.11Up
Whole fly188 124 of 4

Looking for CG8625-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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