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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG8626-RA through 18771 annotations produced 1 hits

Acp53C14a (Acp53C14a):

Annotation Number : CG8626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034152
Gbrowse : chr2R:12635551-12636066 (-) // 100.0 //
Probeset : 1631158_at
Accessions : protein= NP_611152;, nucleotide= NM_137308;
FlyMine data for FBgn0034152.
VDRC has 3 RNAi stocks for FBgn0034152 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 10 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland9 40 of 4 0.00Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart2 00 of 4 0.00Down
Fat body8 70 of 4 0.00Down
Ovary19 171 of 4 0.00Down
Testis255 1314 of 4 0.10Down
Male accessory glands11526 3194 of 4 5.30Up
Virgin spermatheca2 10 of 4 0.00Down
Mated spermatheca4 00 of 4 0.00Down
Adult carcass287 923 of 4 0.10Down
Larval CNS1 10 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut10 51 of 4 0.00Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut5 10 of 4 0.00Down
Larval fat body3 00 of 4 0.00Down
Larval trachea6 51 of 4 0.00Down
Larval carcass2 00 of 4 0.00Down
S2 cells (growing)4 00 of 4 0.00Down
Whole fly2176 3184 of 4

Looking for CG8626-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime