FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8629-RA through 18771 annotations produced 1 hits

(CG8629):

Annotation Number : CG8629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035742
Gbrowse : chr3L:7121012-7121360 (-) // 100.0 //
Probeset : 1626601_at
Accessions : protein= NP_648081;, nucleotide= NM_139824;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // inferr
FlyMine data for FBgn0035742.
BDGP gene expression has embryonic in situ data for CG8629: 8 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0035742 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	None
Head	1 ± 0	0 of 4	0.10	None
Eye	1 ± 1	0 of 4	0.06	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.00	None
Salivary gland	2 ± 0	0 of 4	0.08	None
Crop	1 ± 0	0 of 4	0.00	None
Midgut	47 ± 5	2 of 4	1.60	None
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	26 ± 3	1 of 4	0.90	None
Heart	2 ± 1	0 of 4	0.07	None
Fat body	1 ± 0	0 of 4	0.06	None
Ovary	0 ± 0	0 of 4	0.00	None
Testis	0 ± 0	0 of 4	0.00	None
Male accessory glands	3 ± 1	0 of 4	0.10	None
Virgin spermatheca	2 ± 0	0 of 4	0.07	None
Mated spermatheca	1 ± 0	0 of 4	0.05	None
Adult carcass	4 ± 1	0 of 4	0.20	None
Larval CNS	1 ± 0	0 of 4	0.05	None
Larval Salivary gland	2 ± 0	0 of 4	0.07	None
Larval midgut	4476 ± 163	4 of 4	153.84	Up
Larval tubule	1 ± 0	0 of 4	0.10	None
Larval hindgut	13 ± 0	2 of 4	0.48	None
Larval fat body	4 ± 2	0 of 4	0.20	None
Larval trachea	174 ± 312	2 of 4	6.00	None
Larval carcass	3 ± 1	0 of 4	0.11	None
S2 cells (growing)	0 ± 0	0 of 4	0.02	None
Whole fly	29 ± 9	3 of 4

Looking for CG8629-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720