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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8630-RA through 18771 annotations produced 1 hits



(CG8630):

Annotation Number : CG8630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038130
Gbrowse : chr3R:9105444-9110316 (+) // 100.0 //
Probeset : 1624398_at
Accessions : protein= NP_731781;, nucleotide= NM_169500;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004768 // stearoyl-CoA 9-desaturase activity // inferred from sequence or structural similarity /// 0004768 // stearoy
FlyMine data for FBgn0038130.
BDGP gene expression has embryonic in situ data for CG8630: 18 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0038130 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 0.20Down
Head59 24 of 4 0.40Down
Eye25 53 of 4 0.15Down
Thoracicoabdominal ganglion25 14 of 4 0.20Down
Salivary gland68 64 of 4 0.41Down
Crop13 22 of 4 0.10Down
Midgut15 10 of 4 0.10Down
Tubule11 11 of 4 0.10Down
Hindgut26 13 of 4 0.20Down
Heart11 13 of 4 0.07Down
Fat body38 34 of 4 0.23Down
Ovary0 00 of 4 0.00Down
Testis9 12 of 4 0.10Down
Male accessory glands668 604 of 4 4.00Up
Virgin spermatheca172 104 of 4 1.04None
Mated spermatheca355 234 of 4 2.13Up
Adult carcass73 64 of 4 0.40Down
Larval CNS43 244 of 4 0.26Down
Larval Salivary gland157 104 of 4 0.94None
Larval midgut74 84 of 4 0.44Down
Larval tubule8 31 of 4 0.10Down
Larval hindgut171 104 of 4 1.03None
Larval fat body2 10 of 4 0.00Down
Larval trachea1971 1384 of 411.82Up
Larval carcass760 1634 of 4 4.56Up
S2 cells (growing)7 10 of 4 0.04Down
Whole fly166 74 of 4

Looking for CG8630-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime