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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8631-RB through 18771 annotations produced 1 hits



male specifc lethal (msl-3):

Annotation Number : CG8631
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002775
Gbrowse : chr3L:7116570-7118580 (-) // 100.0 //
Probeset : 1627738_a_at
Accessions : protein= NP_523951; /// NP_729213;, nucleotide= NM_079227; /// NM_168191;
Pathway : by hyperactivation of X chromosome // non-traceable author statement /// 0009047 // dosage compensation
Interpro : by hyperactivation of X chromosome // traceable author statement /// 0016568 // chromatin modification // inferred from
FlyMine data for FBgn0002775.
BDGP gene expression has embryonic in situ data for msl-3: 4 pix of staining in 1 body parts.
BioGrid reports that CG8631 interacts with CG9506 .
TRiP has 1 RNAi stocks for FBgn0002775 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 0.80None
Head21 14 of 4 0.40Down
Eye30 24 of 4 0.58Down
Thoracicoabdominal ganglion30 14 of 4 0.60Down
Salivary gland28 62 of 4 0.54Down
Crop34 14 of 4 0.70Down
Midgut32 04 of 4 0.60Down
Tubule28 14 of 4 0.50Down
Hindgut24 33 of 4 0.50Down
Heart20 04 of 4 0.39Down
Fat body20 64 of 4 0.39Down
Ovary111 84 of 4 2.20Up
Testis95 14 of 4 1.80Up
Male accessory glands34 64 of 4 0.70None
Virgin spermatheca18 12 of 4 0.36Down
Mated spermatheca14 13 of 4 0.27Down
Adult carcass19 33 of 4 0.40Down
Larval CNS82 124 of 4 1.59Up
Larval Salivary gland48 34 of 4 0.93None
Larval midgut23 10 of 4 0.46Down
Larval tubule30 24 of 4 0.60Down
Larval hindgut28 14 of 4 0.54Down
Larval fat body47 44 of 4 0.90None
Larval trachea41 44 of 4 0.81None
Larval carcass23 33 of 4 0.45Down
S2 cells (growing)61 44 of 4 1.18None
Whole fly51 34 of 4

Looking for CG8631-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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