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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8642-RA through 18771 annotations produced 1 hits



Fibrinogen-related protein (CG8642):

Annotation Number : CG8642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033312
Gbrowse : chr2R:4499398-4501416 (-) // 100.0 //
Probeset : 1622927_at
Accessions : protein= NP_610396;, nucleotide= NM_136552;
Pathway : 0005615 // extracellular space // inferred from electronic annotation
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0033312.
Homophila reports that CG8642 is a close match (1e-28) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 3 RNAi stocks for FBgn0033312 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head1 ± 00 of 4 0.70None
Eye3 ± 10 of 4 1.40None
Thoracicoabdominal ganglion0 ± 00 of 4 0.20None
Salivary gland11 ± 30 of 4 4.48None
Crop1 ± 00 of 4 0.40None
Midgut4 ± 00 of 4 1.50None
Tubule2 ± 00 of 4 0.90None
Hindgut2 ± 00 of 4 0.90None
Heart8 ± 01 of 4 3.17Up
Fat body2 ± 10 of 4 0.97None
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.60None
Male accessory glands3 ± 10 of 4 1.40None
Virgin spermatheca3 ± 10 of 4 1.24None
Mated spermatheca4 ± 00 of 4 1.76None
Adult carcass4 ± 20 of 4 1.70None
Larval CNS0 ± 00 of 4 0.31None
Larval Salivary gland3 ± 10 of 4 1.36None
Larval midgut9 ± 10 of 4 3.56Up
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut3 ± 10 of 4 1.28None
Larval fat body15 ± 21 of 4 5.90Up
Larval trachea0 ± 00 of 4 0.33None
Larval carcass1 ± 00 of 4 0.57None
S2 cells (growing)0 ± 00 of 4 0.23None
Whole fly2 ± 10 of 4

Looking for CG8642-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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