FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8664-RA through 18771 annotations produced 1 hits

/// lethal(1)9Ed (CG8664 /// sesB):

Annotation Number : CG8664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030836
Gbrowse : chrX:17175805-17176744 (-) // 100.0 //
Probeset : 1636618_at
Accessions : protein= NP_511109; /// NP_573211; /// NP_727448; /// NP_727449; /// NP_727450;, nucleotide= NM_078554; /// NM_132983; /// NM_167246; /// NM_167247; /// NM_167248;
Pathway : engulfment // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from direct assay /// 000
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0030836.
VDRC has 5 RNAi stocks for FBgn0030836 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.50	None
Head	12 ± 1	0 of 4	1.30	None
Eye	1 ± 0	0 of 4	0.17	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.50	Down
Salivary gland	3 ± 1	0 of 4	0.30	Down
Crop	15 ± 2	0 of 4	1.60	None
Midgut	52 ± 2	4 of 4	5.10	Up
Tubule	6 ± 1	0 of 4	0.60	Down
Hindgut	10 ± 1	0 of 4	1.00	None
Heart	3 ± 1	0 of 4	0.31	Down
Fat body	3 ± 1	0 of 4	0.35	Down
Ovary	5 ± 0	0 of 4	0.60	Down
Testis	15 ± 1	0 of 4	1.60	Up
Male accessory glands	7 ± 2	0 of 4	0.70	None
Virgin spermatheca	3 ± 1	0 of 4	0.38	Down
Mated spermatheca	3 ± 1	0 of 4	0.37	Down
Adult carcass	14 ± 3	0 of 4	1.40	None
Larval CNS	1 ± 0	0 of 4	0.13	Down
Larval Salivary gland	1 ± 0	0 of 4	0.18	Down
Larval midgut	6247 ± 177	4 of 4	612.52	Up
Larval tubule	5 ± 1	0 of 4	0.50	Down
Larval hindgut	11 ± 2	0 of 4	1.15	None
Larval fat body	28 ± 19	1 of 4	2.80	None
Larval trachea	52 ± 88	1 of 4	5.15	None
Larval carcass	1 ± 0	0 of 4	0.18	Down
S2 cells (growing)	5 ± 1	0 of 4	0.58	None
Whole fly	10 ± 1	1 of 4

Looking for CG8664-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720