FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG8666-RA through 18771 annotations produced 1 hits

Tetraspanin 39D (Tsp39D):

Annotation Number : CG8666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032943
Gbrowse : chr2L:21344626-21358273 (+) // 100.0 //
Probeset : 1627334_at
Accessions : protein= NP_523612;, nucleotide= NM_078888;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0032943.
Homophila reports that CG8666 is a close match (7e-18) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 1 RNAi stocks for FBgn0032943 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032943 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	250 ± 23	4 of 4	9.20	Up
Head	149 ± 10	4 of 4	5.40	Up
Eye	91 ± 7	4 of 4	3.34	Up
Thoracicoabdominal ganglion	122 ± 6	4 of 4	4.50	Up
Salivary gland	16 ± 2	3 of 4	0.62	Down
Crop	104 ± 8	4 of 4	3.80	Up
Midgut	23 ± 2	4 of 4	0.90	None
Tubule	16 ± 1	3 of 4	0.60	Down
Hindgut	52 ± 4	4 of 4	1.90	Up
Heart	11 ± 1	4 of 4	0.42	Down
Fat body	31 ± 4	4 of 4	1.16	None
Ovary	7 ± 1	4 of 4	0.30	Down
Testis	6 ± 0	4 of 4	0.20	Down
Male accessory glands	28 ± 1	4 of 4	1.00	None
Virgin spermatheca	14 ± 1	4 of 4	0.53	Down
Mated spermatheca	28 ± 4	4 of 4	1.02	None
Adult carcass	20 ± 2	4 of 4	0.70	None
Larval CNS	230 ± 45	4 of 4	8.40	Up
Larval Salivary gland	11 ± 0	4 of 4	0.40	Down
Larval midgut	4 ± 1	2 of 4	0.16	Down
Larval tubule	7 ± 0	3 of 4	0.30	Down
Larval hindgut	31 ± 3	4 of 4	1.15	None
Larval fat body	15 ± 1	4 of 4	0.60	Down
Larval trachea	24 ± 7	4 of 4	0.89	None
Larval carcass	23 ± 2	4 of 4	0.85	None
S2 cells (growing)	126 ± 6	4 of 4	4.62	Up
Whole fly	27 ± 1	4 of 4

Looking for CG8666-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720