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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8667-RA through 18771 annotations produced 1 hits



Dimmed (dimm):

Annotation Number : CG8667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023091
Gbrowse : chr2L:21339110-21340347 (+) // 100.0 //
Probeset : 1623210_at
Accessions : protein= NP_523611;, nucleotide= NM_078887;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0023091.
TRiP has 2 RNAi stocks for FBgn0023091 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023091 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.80None
Head4 00 of 4 1.00None
Eye1 00 of 4 0.38None
Thoracicoabdominal ganglion6 10 of 4 1.70None
Salivary gland8 30 of 4 2.20None
Crop5 20 of 4 1.50None
Midgut9 20 of 4 2.30None
Tubule3 00 of 4 0.90None
Hindgut6 10 of 4 1.50None
Heart2 10 of 4 0.57None
Fat body4 20 of 4 1.17None
Ovary2 10 of 4 0.60None
Testis5 11 of 4 1.40None
Male accessory glands3 10 of 4 0.80None
Virgin spermatheca2 10 of 4 0.65None
Mated spermatheca3 10 of 4 0.93None
Adult carcass8 40 of 4 2.20None
Larval CNS1 00 of 4 0.43None
Larval Salivary gland7 20 of 4 1.88None
Larval midgut6 00 of 4 1.71None
Larval tubule1 00 of 4 0.50None
Larval hindgut1 00 of 4 0.44None
Larval fat body6 30 of 4 1.70None
Larval trachea2 10 of 4 0.55None
Larval carcass5 10 of 4 1.32None
S2 cells (growing)3 00 of 4 0.76None
Whole fly4 10 of 4

Looking for CG8667-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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