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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8671-RA through 18771 annotations produced 2 hits



(CG8671):

Annotation Number : CG8671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032938
Gbrowse : chr2L:21262960-21281575 (+) // 100.0 //
Probeset : 1632275_a_at
Accessions : protein= NP_001137852; /// NP_610103; /// NP_724324;, nucleotide= NM_001144380; /// NM_136259; /// NM_165365;
FlyMine data for FBgn0032938.
BDGP gene expression has embryonic in situ data for CG8671: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 14 of 4 1.50Up
Head42 44 of 4 0.70Down
Eye31 34 of 4 0.50Down
Thoracicoabdominal ganglion80 64 of 4 1.30None
Salivary gland79 134 of 4 1.24None
Crop91 64 of 4 1.40Up
Midgut71 14 of 4 1.10None
Tubule25 14 of 4 0.40Down
Hindgut54 34 of 4 0.90None
Heart25 14 of 4 0.41Down
Fat body34 74 of 4 0.54Down
Ovary125 34 of 4 2.00Up
Testis59 14 of 4 0.90None
Male accessory glands39 13 of 4 0.60Down
Virgin spermatheca21 24 of 4 0.34Down
Mated spermatheca24 24 of 4 0.39Down
Adult carcass43 24 of 4 0.70Down
Larval CNS79 64 of 4 1.26Up
Larval Salivary gland52 64 of 4 0.82None
Larval midgut49 34 of 4 0.77None
Larval tubule78 44 of 4 1.20None
Larval hindgut43 14 of 4 0.68Down
Larval fat body69 34 of 4 1.10None
Larval trachea35 74 of 4 0.55Down
Larval carcass31 44 of 4 0.50Down
S2 cells (growing)137 44 of 4 2.17Up
Whole fly63 44 of 4



(CG8671):

Annotation Number : CG8671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032938
Gbrowse : chr2L:21262960-21281575 (+) // 100.0 //
Probeset : 1636102_at
Accessions : protein= NP_001137852; /// NP_610103; /// NP_724324;, nucleotide= NM_001144380; /// NM_136259; /// NM_165365;
FlyMine data for FBgn0032938.
BDGP gene expression has embryonic in situ data for CG8671: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 14 of 4 8.40Up
Head17 24 of 4 2.80Up
Eye12 22 of 4 1.92None
Thoracicoabdominal ganglion40 64 of 4 6.40Up
Salivary gland6 20 of 4 1.04None
Crop8 11 of 4 1.30None
Midgut21 22 of 4 3.50Up
Tubule7 00 of 4 1.20Up
Hindgut5 00 of 4 0.80None
Heart2 10 of 4 0.38Down
Fat body6 30 of 4 1.04None
Ovary3 00 of 4 0.60Down
Testis3 00 of 4 0.50Down
Male accessory glands8 10 of 4 1.30None
Virgin spermatheca5 00 of 4 0.80None
Mated spermatheca5 11 of 4 0.86None
Adult carcass11 00 of 4 1.90Up
Larval CNS22 44 of 4 3.62Up
Larval Salivary gland4 10 of 4 0.74None
Larval midgut6 20 of 4 1.00None
Larval tubule7 01 of 4 1.10None
Larval hindgut6 01 of 4 1.03None
Larval fat body6 10 of 4 1.00None
Larval trachea3 00 of 4 0.59Down
Larval carcass5 00 of 4 0.89None
S2 cells (growing)8 03 of 4 1.41Up
Whole fly6 00 of 4

Looking for CG8671-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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