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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8678-RA through 18771 annotations produced 1 hits



(CG8678):

Annotation Number : CG8678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032935
Gbrowse : chr2L:21212692-21220567 (-) // 99.81 //
Probeset : 1628475_at
Accessions : protein= NP_610100;, nucleotide= NM_136256;
FlyMine data for FBgn0032935.
BDGP gene expression has embryonic in situ data for CG8678: 4 pix of staining in 1 body parts.
BioGrid reports that CG8678 interacts with CG9014 .
TRiP has 1 RNAi stocks for FBgn0032935 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032935 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 ± 34 of 4 2.50Up
Head99 ± 104 of 4 2.00Up
Eye68 ± 44 of 4 1.35None
Thoracicoabdominal ganglion125 ± 74 of 4 2.50Up
Salivary gland88 ± 74 of 4 1.74Up
Crop166 ± 64 of 4 3.30Up
Midgut120 ± 44 of 4 2.40Up
Tubule36 ± 04 of 4 0.70Down
Hindgut98 ± 14 of 4 1.90Up
Heart49 ± 34 of 4 0.98None
Fat body55 ± 124 of 4 1.10None
Ovary62 ± 24 of 4 1.20None
Testis42 ± 24 of 4 0.80None
Male accessory glands25 ± 22 of 4 0.50Down
Virgin spermatheca80 ± 94 of 4 1.58Up
Mated spermatheca41 ± 24 of 4 0.82None
Adult carcass77 ± 34 of 4 1.50Up
Larval CNS36 ± 64 of 4 0.72None
Larval Salivary gland14 ± 21 of 4 0.29Down
Larval midgut163 ± 424 of 4 3.22None
Larval tubule125 ± 44 of 4 2.50Up
Larval hindgut67 ± 64 of 4 1.32None
Larval fat body337 ± 554 of 4 6.70Up
Larval trachea22 ± 04 of 4 0.44Down
Larval carcass32 ± 54 of 4 0.64None
S2 cells (growing)59 ± 34 of 4 1.18None
Whole fly50 ± 64 of 4

Looking for CG8678-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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