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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8679-RA through 18771 annotations produced 1 hits



(CG8679):

Annotation Number : CG8679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032934
Gbrowse : chr2L:21216307-21218527 (-) // 100.0 //
Probeset : 1624200_at
Accessions : protein= NP_610099;, nucleotide= NM_136255;
Pathway : 0005635 // nuclear envelope // inferred from electronic annotation
FlyMine data for FBgn0032934.
TRiP has 1 RNAi stocks for FBgn0032934 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032934 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 24 of 4 0.40Down
Head12 ± 02 of 4 0.30Down
Eye10 ± 22 of 4 0.23Down
Thoracicoabdominal ganglion51 ± 34 of 4 1.10None
Salivary gland21 ± 22 of 4 0.46Down
Crop18 ± 24 of 4 0.40Down
Midgut12 ± 11 of 4 0.30Down
Tubule12 ± 01 of 4 0.30Down
Hindgut26 ± 14 of 4 0.60Down
Heart9 ± 12 of 4 0.21Down
Fat body18 ± 44 of 4 0.40Down
Ovary105 ± 24 of 4 2.30Up
Testis9 ± 02 of 4 0.20Down
Male accessory glands22 ± 30 of 4 0.50Down
Virgin spermatheca30 ± 14 of 4 0.67Down
Mated spermatheca23 ± 14 of 4 0.51Down
Adult carcass12 ± 10 of 4 0.30Down
Larval CNS48 ± 34 of 4 1.04None
Larval Salivary gland18 ± 23 of 4 0.39Down
Larval midgut4 ± 10 of 4 0.09Down
Larval tubule7 ± 11 of 4 0.20Down
Larval hindgut10 ± 02 of 4 0.22Down
Larval fat body75 ± 134 of 4 1.60None
Larval trachea11 ± 42 of 4 0.24Down
Larval carcass8 ± 00 of 4 0.19Down
S2 cells (growing)27 ± 14 of 4 0.59Down
Whole fly46 ± 44 of 4

Looking for CG8679-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime