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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8707-RA through 18771 annotations produced 1 hits



CG8707 (RagC):

Annotation Number : CG8707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033272
Gbrowse : chr2R:4049183-4051018 (-) // 100.0 //
Probeset : 1628397_at
Accessions : protein= NP_610361;, nucleotide= NM_136517;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0003924 // GTPase activity // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred fro
FlyMine data for FBgn0033272.
BDGP gene expression has embryonic in situ data for CG8707: 16 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0033272 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 ± 24 of 4 1.10None
Head298 ± 114 of 4 1.20None
Eye394 ± 184 of 4 1.60Up
Thoracicoabdominal ganglion228 ± 54 of 4 0.90None
Salivary gland587 ± 44 of 4 2.38Up
Crop318 ± 114 of 4 1.30None
Midgut218 ± 164 of 4 0.90None
Tubule224 ± 34 of 4 0.90Down
Hindgut298 ± 34 of 4 1.20None
Heart254 ± 134 of 4 1.03None
Fat body304 ± 424 of 4 1.23None
Ovary311 ± 34 of 4 1.30None
Testis97 ± 54 of 4 0.40Down
Male accessory glands209 ± 94 of 4 0.80None
Virgin spermatheca271 ± 74 of 4 1.10None
Mated spermatheca259 ± 64 of 4 1.05None
Adult carcass307 ± 64 of 4 1.20None
Larval CNS250 ± 174 of 4 1.01None
Larval Salivary gland335 ± 84 of 4 1.36Up
Larval midgut314 ± 194 of 4 1.27None
Larval tubule342 ± 24 of 4 1.40Up
Larval hindgut229 ± 84 of 4 0.93None
Larval fat body450 ± 484 of 4 1.80Up
Larval trachea205 ± 134 of 4 0.83None
Larval carcass292 ± 54 of 4 1.18None
S2 cells (growing)308 ± 64 of 4 1.25None
Whole fly247 ± 244 of 4

Looking for CG8707-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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