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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8713-RA through 18771 annotations produced 1 hits



(CG8713):

Annotation Number : CG8713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033257
Gbrowse : chr2R:3979202-3984450 (+) // 100.0 //
Probeset : 1634229_at
Accessions : protein= NP_610349;, nucleotide= NM_136505;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005250 // A-type (transient outward) potassi
FlyMine data for FBgn0033257.
BDGP gene expression has embryonic in situ data for CG8713: 12 pix of staining in 5 body parts.
Homophila reports that CG8713 is a close match (5e-11) to human gene KCNK9;TASK3 (NP_057685), a gene associated with Birk-Barel mental retardation dysmorphism syndrome, 612292 (3).
TRiP has 1 RNAi stocks for FBgn0033257 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.10Down
Head14 ± 33 of 4 1.10None
Eye1 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.30Down
Salivary gland75 ± 34 of 4 5.55Up
Crop35 ± 34 of 4 2.60Up
Midgut8 ± 20 of 4 0.60None
Tubule6 ± 11 of 4 0.50Down
Hindgut18 ± 14 of 4 1.30None
Heart111 ± 174 of 4 8.12Up
Fat body4 ± 20 of 4 0.30Down
Ovary13 ± 04 of 4 1.00None
Testis18 ± 13 of 4 1.40None
Male accessory glands7 ± 20 of 4 0.60None
Virgin spermatheca6 ± 10 of 4 0.46Down
Mated spermatheca3 ± 10 of 4 0.26Down
Adult carcass21 ± 22 of 4 1.60None
Larval CNS5 ± 11 of 4 0.38Down
Larval Salivary gland41 ± 34 of 4 3.06Up
Larval midgut8 ± 00 of 4 0.65None
Larval tubule7 ± 11 of 4 0.60Down
Larval hindgut11 ± 04 of 4 0.83None
Larval fat body30 ± 24 of 4 2.20Up
Larval trachea4 ± 20 of 4 0.34Down
Larval carcass46 ± 84 of 4 3.37Up
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly13 ± 14 of 4

Looking for CG8713-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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