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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8715-RA through 18771 annotations produced 1 hits



transcription unit A (lig):

Annotation Number : CG8715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020279
Gbrowse : chr2R:3955485-3966330 (+) // 100.0 //
Probeset : 1627372_a_at
Accessions : protein= NP_001014503; /// NP_001163081; /// NP_001163082; /// NP_001163083; /// NP_610348; /// NP_724643; /// NP_995778;, nucleotide= NM_001014503; /// NM_001169610; /// NM_001169611; /// NM_001169612; /// NM_136504; /// NM_165586; /// NM_206056;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 000573
FlyMine data for FBgn0020279.
VDRC has 1 RNAi stocks for FBgn0020279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 64 of 4 0.90None
Head157 104 of 4 0.60Down
Eye184 124 of 4 0.65Down
Thoracicoabdominal ganglion175 64 of 4 0.60Down
Salivary gland187 194 of 4 0.65Down
Crop251 64 of 4 0.90None
Midgut137 94 of 4 0.50Down
Tubule76 24 of 4 0.30Down
Hindgut206 54 of 4 0.70Down
Heart281 254 of 4 0.98None
Fat body203 164 of 4 0.71Down
Ovary543 154 of 4 1.90Up
Testis40 34 of 4 0.10Down
Male accessory glands288 154 of 4 1.00None
Virgin spermatheca121 114 of 4 0.42Down
Mated spermatheca124 134 of 4 0.43Down
Adult carcass128 64 of 4 0.40Down
Larval CNS664 904 of 4 2.33Up
Larval Salivary gland453 234 of 4 1.59Up
Larval midgut205 64 of 4 0.72Down
Larval tubule387 314 of 4 1.40Up
Larval hindgut359 124 of 4 1.26Up
Larval fat body334 234 of 4 1.20None
Larval trachea382 524 of 4 1.34Up
Larval carcass269 164 of 4 0.94None
S2 cells (growing)419 194 of 4 1.47Up
Whole fly285 144 of 4

Looking for CG8715-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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