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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8730-RA through 18771 annotations produced 1 hits



Drosha (drosha):

Annotation Number : CG8730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026722
Gbrowse : chr2R:3819930-3824360 (+) // 100.0 //
Probeset : 1630216_at
Accessions : protein= NP_477436;, nucleotide= NM_058088;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred fro
FlyMine data for FBgn0026722.
TRiP has 3 RNAi stocks for FBgn0026722 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026722 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 54 of 4 1.70Up
Head54 24 of 4 0.80Down
Eye61 24 of 4 0.86None
Thoracicoabdominal ganglion118 84 of 4 1.60Up
Salivary gland164 24 of 4 2.29Up
Crop94 04 of 4 1.30Up
Midgut44 14 of 4 0.60Down
Tubule78 14 of 4 1.10Up
Hindgut76 24 of 4 1.10None
Heart39 34 of 4 0.56Down
Fat body35 74 of 4 0.49Down
Ovary129 24 of 4 1.80Up
Testis11 14 of 4 0.20Down
Male accessory glands109 34 of 4 1.50Up
Virgin spermatheca49 14 of 4 0.69Down
Mated spermatheca60 34 of 4 0.83None
Adult carcass43 34 of 4 0.60Down
Larval CNS159 74 of 4 2.22Up
Larval Salivary gland138 34 of 4 1.93Up
Larval midgut32 24 of 4 0.46Down
Larval tubule68 24 of 4 1.00None
Larval hindgut94 44 of 4 1.32Up
Larval fat body31 24 of 4 0.40Down
Larval trachea63 04 of 4 0.88None
Larval carcass54 34 of 4 0.75Down
S2 cells (growing)78 54 of 4 1.09None
Whole fly71 54 of 4

Looking for CG8730-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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