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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8734-RA through 18771 annotations produced 1 hits



chr2R:4513940-4515089 (-) // 100.0 // (CG8734):

Annotation Number : CG8734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627139_at
Accessions : protein= , nucleotide= NP_610399;
Pathway : 0006024 // glycosaminoglycan biosynthetic process // inferred from genetic interaction /// 0006486 // protein glycosylat
Interpro : 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 24 of 4 1.50Up
Head28 ± 34 of 4 0.80None
Eye30 ± 34 of 4 0.83None
Thoracicoabdominal ganglion61 ± 54 of 4 1.70Up
Salivary gland32 ± 50 of 4 0.89None
Crop25 ± 24 of 4 0.70Down
Midgut38 ± 24 of 4 1.00None
Tubule22 ± 13 of 4 0.60Down
Hindgut33 ± 24 of 4 0.90None
Heart26 ± 24 of 4 0.72Down
Fat body22 ± 23 of 4 0.62Down
Ovary95 ± 24 of 4 2.60Up
Testis12 ± 02 of 4 0.30Down
Male accessory glands29 ± 44 of 4 0.80None
Virgin spermatheca22 ± 23 of 4 0.60Down
Mated spermatheca23 ± 01 of 4 0.64Down
Adult carcass27 ± 51 of 4 0.80None
Larval CNS69 ± 34 of 4 1.91Up
Larval Salivary gland37 ± 54 of 4 1.02None
Larval midgut23 ± 14 of 4 0.65Down
Larval tubule29 ± 44 of 4 0.80None
Larval hindgut24 ± 24 of 4 0.67Down
Larval fat body21 ± 20 of 4 0.60Down
Larval trachea47 ± 84 of 4 1.30None
Larval carcass31 ± 14 of 4 0.87None
S2 cells (growing)85 ± 24 of 4 2.34Up
Whole fly36 ± 14 of 4

Looking for CG8734-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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