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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8738-RA through 18771 annotations produced 1 hits



(CG8738):

Annotation Number : CG8738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033321
Gbrowse : chr2R:4583930-4586088 (+) // 100.0 //
Probeset : 1628468_at
Accessions : protein= NP_610403;, nucleotide= NM_136559;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0033321.
BDGP gene expression has embryonic in situ data for CG8738: 13 pix of staining in 2 body parts.
Homophila reports that CG8738 is a close match (9e-11) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 3 RNAi stocks for FBgn0033321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head83 ± 44 of 4 3.50Up
Eye55 ± 64 of 4 2.35Up
Thoracicoabdominal ganglion6 ± 20 of 4 0.30Down
Salivary gland60 ± 41 of 4 2.58Up
Crop124 ± 94 of 4 5.30Up
Midgut3 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut75 ± 14 of 4 3.20Up
Heart79 ± 64 of 4 3.37Up
Fat body77 ± 144 of 4 3.30Up
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca143 ± 74 of 4 6.10Up
Mated spermatheca105 ± 54 of 4 4.51Up
Adult carcass106 ± 44 of 4 4.50Up
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland4 ± 00 of 4 0.18Down
Larval midgut3 ± 00 of 4 0.14Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut15 ± 12 of 4 0.67Down
Larval fat body104 ± 164 of 4 4.40Up
Larval trachea52 ± 84 of 4 2.23Up
Larval carcass59 ± 34 of 4 2.53Up
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly23 ± 23 of 4

Looking for CG8738-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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