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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8745-RA through 18771 annotations produced 1 hits



(CG8745):

Annotation Number : CG8745
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036381
Gbrowse : chr3L:13853101-13859985 (-) // 100.0 //
Probeset : 1641270_at
Accessions : protein= NP_648665;, nucleotide= NM_140408;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004587 // ornithine-oxo-acid transaminase acti
FlyMine data for FBgn0036381.
BDGP gene expression has embryonic in situ data for CG8745: 29 pix of staining in 14 body parts.
Homophila reports that CG8745 is a close match (2e-12) to human gene ABAT;GABAT (NP_065737), a gene associated with GABA-transaminase deficiency (3).
VDRC has 1 RNAi stocks for FBgn0036381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1109 ± 374 of 4 3.30Up
Head715 ± 164 of 4 2.10Up
Eye235 ± 354 of 4 0.70None
Thoracicoabdominal ganglion612 ± 224 of 4 1.80Up
Salivary gland25 ± 23 of 4 0.08Down
Crop14 ± 14 of 4 0.00Down
Midgut661 ± 474 of 4 2.00Up
Tubule3397 ± 1844 of 410.10Up
Hindgut647 ± 174 of 4 1.90Up
Heart991 ± 534 of 4 2.96Up
Fat body1390 ± 4014 of 4 4.15Up
Ovary8 ± 14 of 4 0.00Down
Testis8 ± 04 of 4 0.00Down
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca2225 ± 1614 of 4 6.64Up
Mated spermatheca2035 ± 1774 of 4 6.07Up
Adult carcass596 ± 124 of 4 1.80Up
Larval CNS328 ± 204 of 4 0.98None
Larval Salivary gland64 ± 74 of 4 0.19Down
Larval midgut713 ± 1554 of 4 2.13None
Larval tubule729 ± 684 of 4 2.20Up
Larval hindgut465 ± 1014 of 4 1.39None
Larval fat body5476 ± 5044 of 416.30Up
Larval trachea45 ± 314 of 4 0.14Down
Larval carcass541 ± 1154 of 4 1.61None
S2 cells (growing)5 ± 14 of 4 0.02Down
Whole fly335 ± 394 of 4

Looking for CG8745-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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