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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8749-RA through 18771 annotations produced 1 hits



U1 snRNP-specific 70K protein (snRNP-U1-70K):

Annotation Number : CG8749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016978
Gbrowse : chr2L:6969824-6971728 (-) // 100.0 //
Probeset : 1635063_at
Accessions : protein= NP_477205;, nucleotide= NM_057857;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0016978.
BDGP gene expression has embryonic in situ data for snRNP70K: 13 pix of staining in 13 body parts.
BioGrid reports that CG8749 interacts with CG8912 .
TRiP has 1 RNAi stocks for FBgn0016978 available for purchase.
VDRC has 2 RNAi stocks for FBgn0016978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 ± 34 of 4 0.90None
Head88 ± 34 of 4 0.50Down
Eye66 ± 54 of 4 0.35Down
Thoracicoabdominal ganglion141 ± 54 of 4 0.70Down
Salivary gland160 ± 64 of 4 0.83None
Crop116 ± 74 of 4 0.60Down
Midgut91 ± 94 of 4 0.50Down
Tubule149 ± 104 of 4 0.80Down
Hindgut113 ± 44 of 4 0.60Down
Heart64 ± 54 of 4 0.34Down
Fat body63 ± 84 of 4 0.33Down
Ovary381 ± 104 of 4 2.00Up
Testis107 ± 54 of 4 0.60Down
Male accessory glands145 ± 94 of 4 0.80Down
Virgin spermatheca100 ± 34 of 4 0.52Down
Mated spermatheca114 ± 94 of 4 0.59Down
Adult carcass89 ± 104 of 4 0.50Down
Larval CNS336 ± 224 of 4 1.74Up
Larval Salivary gland246 ± 94 of 4 1.28Up
Larval midgut94 ± 64 of 4 0.49Down
Larval tubule128 ± 34 of 4 0.70Down
Larval hindgut149 ± 114 of 4 0.78Down
Larval fat body132 ± 74 of 4 0.70Down
Larval trachea139 ± 284 of 4 0.72Down
Larval carcass180 ± 134 of 4 0.94None
S2 cells (growing)259 ± 64 of 4 1.35Up
Whole fly192 ± 124 of 4

Looking for CG8749-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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