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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8764-RA through 18771 annotations produced 1 hits



Ubiquinol-cytochrome C reductase (ox):

Annotation Number : CG8764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011227
Gbrowse : chr2R:8644635-8645028 (-) // 100.0 //
Probeset : 1633973_at
Accessions : protein= NP_476985;, nucleotide= NM_057637;
Pathway : ubiquinol to cytochrome c // inferred from sequence or structural similarity /// 0006122 // mitochondrial electron tran
Interpro : ubiquinol to cytochrome c // inferred from electronic annotation /// 0006810 // transport // inferred from electronic a
FlyMine data for FBgn0011227.
BioGrid reports that CG8764 interacts with CG2759 .
VDRC has 2 RNAi stocks for FBgn0011227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1209 ± 54 of 4 0.80Down
Head1705 ± 754 of 4 1.10None
Eye1525 ± 504 of 4 0.97None
Thoracicoabdominal ganglion1365 ± 674 of 4 0.90None
Salivary gland2078 ± 604 of 4 1.33Up
Crop1514 ± 1084 of 4 1.00None
Midgut1353 ± 544 of 4 0.90None
Tubule1313 ± 584 of 4 0.80Down
Hindgut2057 ± 704 of 4 1.30Up
Heart2096 ± 824 of 4 1.34Up
Fat body1985 ± 1504 of 4 1.27Up
Ovary571 ± 74 of 4 0.40Down
Testis873 ± 124 of 4 0.60Down
Male accessory glands660 ± 484 of 4 0.40Down
Virgin spermatheca2181 ± 834 of 4 1.39Up
Mated spermatheca1944 ± 574 of 4 1.24Up
Adult carcass2943 ± 1124 of 4 1.90Up
Larval CNS701 ± 834 of 4 0.45Down
Larval Salivary gland998 ± 214 of 4 0.64Down
Larval midgut1297 ± 574 of 4 0.83Down
Larval tubule912 ± 434 of 4 0.60Down
Larval hindgut1807 ± 504 of 4 1.15Up
Larval fat body389 ± 184 of 4 0.20Down
Larval trachea826 ± 474 of 4 0.53Down
Larval carcass1935 ± 1924 of 4 1.24None
S2 cells (growing)466 ± 164 of 4 0.30Down
Whole fly1567 ± 714 of 4

Looking for CG8764-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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