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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8771-RA through 18771 annotations produced 1 hits



(CG8771):

Annotation Number : CG8771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033766
Gbrowse : chr2R:8567549-8573670 (-) // 100.0 //
Probeset : 1635778_at
Accessions : protein= NP_610810;, nucleotide= NM_136966;
FlyMine data for FBgn0033766.
VDRC has 2 RNAi stocks for FBgn0033766 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 04 of 4 0.50Down
Head23 24 of 4 0.30Down
Eye18 14 of 4 0.25Down
Thoracicoabdominal ganglion40 24 of 4 0.60Down
Salivary gland36 24 of 4 0.50Down
Crop28 24 of 4 0.40Down
Midgut20 13 of 4 0.30Down
Tubule22 13 of 4 0.30Down
Hindgut23 14 of 4 0.30Down
Heart15 24 of 4 0.22Down
Fat body24 14 of 4 0.34Down
Ovary162 24 of 4 2.20Up
Testis16 14 of 4 0.20Down
Male accessory glands71 24 of 4 1.00None
Virgin spermatheca19 24 of 4 0.27Down
Mated spermatheca21 04 of 4 0.30Down
Adult carcass22 23 of 4 0.30Down
Larval CNS153 64 of 4 2.12Up
Larval Salivary gland78 34 of 4 1.09None
Larval midgut19 13 of 4 0.27Down
Larval tubule22 04 of 4 0.30Down
Larval hindgut32 24 of 4 0.45Down
Larval fat body26 14 of 4 0.40Down
Larval trachea60 94 of 4 0.83None
Larval carcass39 14 of 4 0.55Down
S2 cells (growing)116 24 of 4 1.61Up
Whole fly72 24 of 4

Looking for CG8771-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime