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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8773-RA through 18771 annotations produced 1 hits



(CG8773):

Annotation Number : CG8773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038135
Gbrowse : chr3R:9120471-9124010 (+) // 100.0 //
Probeset : 1635769_at
Accessions : protein= NP_650273;, nucleotide= NM_142016;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0038135.
VDRC has 2 RNAi stocks for FBgn0038135 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye4 ± 11 of 4 0.04Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland13 ± 22 of 4 0.11Down
Crop2 ± 10 of 4 0.00Down
Midgut1539 ± 434 of 412.30Up
Tubule117 ± 174 of 4 0.90None
Hindgut188 ± 124 of 4 1.50Up
Heart2 ± 00 of 4 0.02Down
Fat body4 ± 20 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands5 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut1786 ± 244 of 414.28Up
Larval tubule172 ± 164 of 4 1.40None
Larval hindgut293 ± 234 of 4 2.35Up
Larval fat body2 ± 10 of 4 0.00Down
Larval trachea3 ± 10 of 4 0.03Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)2 ± 10 of 4 0.02Down
Whole fly125 ± 144 of 4

Looking for CG8773-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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