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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8778-RA through 18771 annotations produced 1 hits



Enoyl-CoA hydratase /// (CG8778 /// DmirCG8778):

Annotation Number : CG8778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033761
Gbrowse : chr2R:8538809-8539987 (-) // 100.0 //
Probeset : 1627526_at
Accessions : protein= NP_610805;, nucleotide= NM_136961;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // infe
FlyMine data for FBgn0033761.
Homophila reports that CG8778 is a close match (6e-25) to human gene HADHA;MTPA (NP_000173), a gene associated with Fatty liver, acute, of pregnancy, 609016 (3);HELLP syndrome, maternal, of pregnancy, 609016 (3);LCHAD deficiency, 609016 (3);Trifunctional protein deficiency, 609015 (3).
TRiP has 1 RNAi stocks for FBgn0033761 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain100 ± 64 of 4 0.60Down
Head130 ± 74 of 4 0.70Down
Eye72 ± 54 of 4 0.41Down
Thoracicoabdominal ganglion97 ± 64 of 4 0.50Down
Salivary gland466 ± 214 of 4 2.61Up
Crop126 ± 74 of 4 0.70Down
Midgut193 ± 114 of 4 1.10None
Tubule379 ± 84 of 4 2.10Up
Hindgut184 ± 84 of 4 1.00None
Heart168 ± 104 of 4 0.94None
Fat body223 ± 284 of 4 1.25Up
Ovary343 ± 64 of 4 1.90Up
Testis61 ± 44 of 4 0.30Down
Male accessory glands77 ± 44 of 4 0.40Down
Virgin spermatheca225 ± 94 of 4 1.26Up
Mated spermatheca176 ± 64 of 4 0.99None
Adult carcass149 ± 34 of 4 0.80None
Larval CNS214 ± 254 of 4 1.20None
Larval Salivary gland326 ± 264 of 4 1.83Up
Larval midgut170 ± 54 of 4 0.95None
Larval tubule210 ± 104 of 4 1.20None
Larval hindgut287 ± 264 of 4 1.61Up
Larval fat body100 ± 164 of 4 0.60Down
Larval trachea254 ± 414 of 4 1.43Up
Larval carcass170 ± 164 of 4 0.95None
S2 cells (growing)229 ± 24 of 4 1.28Up
Whole fly178 ± 104 of 4

Looking for CG8778-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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