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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8784-RA through 18771 annotations produced 1 hits



(CG8784):

Annotation Number : CG8784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038140
Gbrowse : chr3R:9165891-9170508 (+) // 100.0 //
Probeset : 1641712_at
Accessions : protein= NP_731790;, nucleotide= NM_169507;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to mem
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0038140.
Homophila reports that CG8784 is a close match (7e-11) to human gene GPR54 (NP_115940), a gene associated with Hypogonadotropic hypogonadism, 146110 (3);Precocious puberty, central, 176400 (3).
TRiP has 1 RNAi stocks for FBgn0038140 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 24 of 412.90Up
Head1 ± 00 of 4 0.90None
Eye3 ± 10 of 4 2.67None
Thoracicoabdominal ganglion16 ± 13 of 412.30Up
Salivary gland12 ± 11 of 4 9.02Up
Crop4 ± 20 of 4 3.00None
Midgut1 ± 00 of 4 1.40None
Tubule1 ± 00 of 4 1.30None
Hindgut1 ± 00 of 4 0.90None
Heart0 ± 00 of 4 0.60None
Fat body2 ± 20 of 4 2.00None
Ovary0 ± 00 of 4 0.70None
Testis2 ± 00 of 4 1.50None
Male accessory glands5 ± 10 of 4 4.10None
Virgin spermatheca1 ± 00 of 4 0.76None
Mated spermatheca1 ± 00 of 4 0.84None
Adult carcass3 ± 10 of 4 2.70None
Larval CNS15 ± 14 of 411.25Up
Larval Salivary gland1 ± 00 of 4 1.15None
Larval midgut1 ± 00 of 4 1.05None
Larval tubule3 ± 10 of 4 2.50None
Larval hindgut1 ± 00 of 4 1.07None
Larval fat body2 ± 10 of 4 1.90None
Larval trachea4 ± 30 of 4 3.09None
Larval carcass2 ± 00 of 4 1.53None
S2 cells (growing)2 ± 00 of 4 1.75None
Whole fly1 ± 00 of 4

Looking for CG8784-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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