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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8785-RA through 18771 annotations produced 1 hits



(CG8785):

Annotation Number : CG8785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033760
Gbrowse : chr2R:8528194-8535718 (-) // 100.0 //
Probeset : 1638240_s_at
Accessions : protein= NP_610804; /// NP_725205;, nucleotide= NM_136960; /// NM_165932;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033760.
BDGP gene expression has embryonic in situ data for CG8785: 8 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0033760 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.00Down
Head111 144 of 4 0.60None
Eye7 20 of 4 0.04Down
Thoracicoabdominal ganglion9 20 of 4 0.10Down
Salivary gland915 414 of 4 5.23Up
Crop2 00 of 4 0.00Down
Midgut1679 734 of 4 9.60Up
Tubule73 53 of 4 0.40Down
Hindgut130 104 of 4 0.70None
Heart4 10 of 4 0.03Down
Fat body13 60 of 4 0.08Down
Ovary2 00 of 4 0.00Down
Testis8 20 of 4 0.00Down
Male accessory glands35 72 of 4 0.20Down
Virgin spermatheca48 54 of 4 0.28Down
Mated spermatheca81 74 of 4 0.46None
Adult carcass47 63 of 4 0.30Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.02Down
Larval midgut1774 2054 of 410.15Up
Larval tubule155 34 of 4 0.90None
Larval hindgut399 434 of 4 2.28Up
Larval fat body3 00 of 4 0.00Down
Larval trachea84 494 of 4 0.48None
Larval carcass59 311 of 4 0.34Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly174 314 of 4

Looking for CG8785-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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