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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8791-RA through 18771 annotations produced 1 hits



(CG8791):

Annotation Number : CG8791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033234
Gbrowse : chr2R:3814181-3817432 (+) // 100.0 //
Probeset : 1629732_at
Accessions : protein= NP_610332;, nucleotide= NM_136488;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0033234.
BDGP gene expression has embryonic in situ data for CG8791: 21 pix of staining in 3 body parts.
Homophila reports that CG8791 is a close match (9e-60) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
TRiP has 1 RNAi stocks for FBgn0033234 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033234 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 13 of 4 0.10Down
Head11 ± 00 of 4 0.10Down
Eye5 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion28 ± 34 of 4 0.30Down
Salivary gland47 ± 54 of 4 0.49None
Crop7 ± 31 of 4 0.10Down
Midgut292 ± 164 of 4 3.00Up
Tubule2753 ± 10514 of 427.90Up
Hindgut454 ± 324 of 4 4.60Up
Heart19 ± 23 of 4 0.19Down
Fat body15 ± 151 of 4 0.15Down
Ovary46 ± 24 of 4 0.50None
Testis21 ± 13 of 4 0.20Down
Male accessory glands9 ± 31 of 4 0.10Down
Virgin spermatheca8 ± 10 of 4 0.08Down
Mated spermatheca6 ± 10 of 4 0.07Down
Adult carcass9 ± 30 of 4 0.10Down
Larval CNS14 ± 44 of 4 0.15Down
Larval Salivary gland9 ± 20 of 4 0.09Down
Larval midgut111 ± 74 of 4 1.13None
Larval tubule1279 ± 1474 of 413.00Up
Larval hindgut43 ± 34 of 4 0.45None
Larval fat body18 ± 12 of 4 0.20Down
Larval trachea7 ± 21 of 4 0.08Down
Larval carcass10 ± 10 of 4 0.11Down
S2 cells (growing)4 ± 00 of 4 0.05Down
Whole fly98 ± 214 of 4

Looking for CG8791-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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