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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8795-RA through 18771 annotations produced 1 hits



(CG8795):

Annotation Number : CG8795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038139
Gbrowse : chr3R:9154791-9159885 (-) // 99.83 //
Probeset : 1633720_s_at
Accessions : protein= NP_001014618; /// NP_731788; /// NP_731789;, nucleotide= NM_001014618; /// NM_169505; /// NM_169506;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016021 // integral to mem
Interpro : 0001653 // peptide receptor activity // inferred from direct assay /// 0004871 // signal transducer activity // inferred
FlyMine data for FBgn0038139.
Homophila reports that CG8795 is a close match (5e-11) to human gene DRD3;ETM1;FET1 (NP_387512), a gene associated with {Essential tremor, susceptibility to}, 190300 (3);{Schizophrenia, susceptibility to}, 181500 (3).
TRiP has 2 RNAi stocks for FBgn0038139 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 04 of 4 4.00Up
Head3 10 of 4 0.60None
Eye3 00 of 4 0.52None
Thoracicoabdominal ganglion34 54 of 4 5.80Up
Salivary gland7 30 of 4 1.24None
Crop94 24 of 416.00Up
Midgut6 20 of 4 1.10None
Tubule2 00 of 4 0.40Down
Hindgut1 00 of 4 0.20Down
Heart2 11 of 4 0.49None
Fat body5 10 of 4 0.90None
Ovary4 10 of 4 0.70None
Testis3 10 of 4 0.60None
Male accessory glands39 34 of 4 6.70Up
Virgin spermatheca4 10 of 4 0.80None
Mated spermatheca4 00 of 4 0.80None
Adult carcass10 40 of 4 1.80None
Larval CNS17 34 of 4 3.00Up
Larval Salivary gland6 10 of 4 1.10None
Larval midgut15 21 of 4 2.53Up
Larval tubule3 10 of 4 0.50None
Larval hindgut11 11 of 4 1.92Up
Larval fat body10 30 of 4 1.70None
Larval trachea7 31 of 4 1.20None
Larval carcass151 314 of 425.56Up
S2 cells (growing)1 00 of 4 0.21Down
Whole fly5 10 of 4

Looking for CG8795-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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