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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG8804-RB through 18771 annotations produced 1 hits



wunen (wun):

Annotation Number : CG8804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016078
Gbrowse : chr2R:5288051-5300965 (-) // 100.0 //
Probeset : 1631573_a_at
Accessions : protein= NP_477193; /// NP_724787;, nucleotide= NM_057845; /// NM_165674;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity /
FlyMine data for FBgn0016078.
BDGP gene expression has embryonic in situ data for wun: 12 pix of staining in 3 body parts.
TRiP has 2 RNAi stocks for FBgn0016078 available for purchase.
VDRC has 4 RNAi stocks for FBgn0016078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 64 of 4 2.30Up
Head137 74 of 4 1.50Up
Eye108 104 of 4 1.17None
Thoracicoabdominal ganglion268 54 of 4 2.90Up
Salivary gland804 394 of 4 8.69Up
Crop781 174 of 4 8.40Up
Midgut266 84 of 4 2.90Up
Tubule203 334 of 4 2.20Up
Hindgut515 24 of 4 5.60Up
Heart86 44 of 4 0.94None
Fat body68 54 of 4 0.74None
Ovary86 44 of 4 0.90None
Testis27 24 of 4 0.30Down
Male accessory glands84 54 of 4 0.90None
Virgin spermatheca64 14 of 4 0.70None
Mated spermatheca68 24 of 4 0.74None
Adult carcass89 34 of 4 1.00None
Larval CNS74 114 of 4 0.81None
Larval Salivary gland73 44 of 4 0.79None
Larval midgut259 204 of 4 2.81Up
Larval tubule198 44 of 4 2.10Up
Larval hindgut207 104 of 4 2.24Up
Larval fat body14 13 of 4 0.20Down
Larval trachea70 114 of 4 0.76None
Larval carcass144 304 of 4 1.57None
S2 cells (growing)98 74 of 4 1.06None
Whole fly92 84 of 4

Looking for CG8804-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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